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A new protocol for constructing the ortholog table in microbial genome database for comparative analysis (MBGD) @ NIG International symposium 2017
NIG International symposium 2017, Commemorating the 30th Anniversary of DDBJ was held in Mishima Citizens Cultual Hall in shizuoka, Japan. On the third day of the symposium (29 May), oral sessions were held.
In this talk, Ikuo Uchiyama makes a presentation entitled "A new protocol for constructing the ortholog table in microbial genome database for comparative analysis (MBGD)". (22:31)
All presentations are listed in the YouTube list.
In this talk, Ikuo Uchiyama makes a presentation entitled "A new protocol for constructing the ortholog table in microbial genome database for comparative analysis (MBGD)". (22:31)
All presentations are listed in the YouTube list.
見どころダイジェスト
- 00:17 1. Growth of microbial genome data～
- 01:54 2. MBGD: Microbial Genome Database for Comparative Analysis～
- 02:23 3. Ortholog table～
- 03:24 4. Taxonomy specific orthodog table～
- 05:02 5. Comparative analysis of 30 strains of Helicobacter pylori～
- 06:00 6. Ortholog classification considering domain fusion / fission～
- 07:09 7. Data processing flow in MBGD～
- 08:25 8. Ortholog data construction procedure in previous MBGD～
- 09:08 9. Problem in previous procedure～
- 10:20 10. Pan-genome based ortholog analysis procedure～
- 11:30 11. Stepwise protocol for ortholox grouping～
- 12:20 12. Selection of representative gene～
- 14:54 13. Expanding pan-genome into individual genomes～
- 16:17 14. MBGD Hierarchical clustering browser～
- 16:50 15. Size of pan-genome～
- 17:46 16. Cluster size in the standard ortholog table～
- 19:11 17. Distribution of ortholog group size (the number of genera)～
- 20:23 18. Species level conservation and genus level conservation～
- 21:45 19. Non-core genes conserved beyond species / genera～
- 22:07 20. Achnowledgments～
動画ファイルのダウンロード
170713_NIGsympo_209_uchiyama.mov