統合TV 統合TVは、ライフサイエンス統合データベースセンター(DBCLS)が発信する生命科学分野の有用なデータベース(DB)やウェブツールの活用法を動画で紹介するウェブサイトです。くわしくは はじめての方へ をご覧ください。ご質問、ご要望は、お問い合わせ もしくは ライフサイエンスQA からお願いします。TogoTV beta ('togo' means 'integration' in Japanese) is an archive of tutorial videos expounding how to use biological databases and tools. Although most of contents are currently depicted in Japanese, you can find English contents in TogoTV international. Please post any comments, suggestions, and requests at each content page, e-mail to the address described at the bottom of each page or contact form. This site is provided by Database Center for Life Science (DBCLS) and funded by MEXT Integrated Database Project in Japan.

新しい統合TVはこちらから!→ 統合TV

TogoTV international

TogoTV paper published in Briefings in Bioinformatics. (2011/7/29)

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2010-08-16

_ [DBCLS][English] How to use Gene Expression Omnibus (GEO) Overview 2010

How to use Gene Expression Omnibus (GEO) Overview 2010

GEO (Gene Expression Omnibus) is a gene expression data repository that accepts array- and sequence-based data. It is developed and maintained by NCBI (National Center for Biotechnology Information). It has become very difficult to grasp the outline of data accepted by GEO, since GEO accepts a variety of gene expression data, (the accepted data are categorized into three types:Datasets derived from research projects, Samples used and Platform to produce the data) that has been generated using different experimental methods.

To ease this situation, Dr. Okubo and colleagues at the National Institute of Genetics (Japan) have developed the Gene Expression Omnibus (GEO) Overview. It is now maintained by the Database Center for Life Science (DBCLS). This tutorial describes how to use the "Gene Expression Omnibus (GEO) Overview" . It should be helpful when one wants to find out the outline of the abundant gene expression data available from GEO.

Get the Flash Player to see this movie.この動画を再生するにはAdobe Flash Player (無料)が必要です

また、JavaScriptをOnにする必要があります。
Keywords: DBCLS,GEO,gene expression,microarray,overview

【Digest】The scene is played when you click on the link below.

  1. 1. Introduction of GEO Overview. (56sec)
  2. 2. Registration Data whole story. (2min40sec)
  3. 3. Distribution of national registry data. (3min15sec)
  4. 4. Change registration data. (4min01sec)

You can also watch YouTube version of this togotv.


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文部科学省委託研究開発事業「統合データベースプロジェクト」MEXT Integrated Database Project
大学共同利用機関法人 情報・システム研究機構 ライフサイエンス統合データベースセンター 統合TVチームDatabase Center for Life Science (DBCLS), Research Organization of Information and Systems (ROIS)
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