gEVE, genome-scale endogenous viral element database, and its applications @ NIG International symposium 2017

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2017.07.12

17:46

作者: TogoTV

NIG International symposium 2017, Commemorating the 30th Anniversary of DDBJ was held in Mishima Citizens Cultual Hall in shizuoka, Japan. On the third day of the symposium (29 May), oral sessions were held.
In this talk, So Nakagawa makes a presentation entitled "gEVE, genome-scale endogenous viral element database, and its applications". (17:46)
All presentations are listed in the YouTube list.

00:24 1. Today’ topics～
01:00 2. Virus: exogenous or endogenous～
01:38 3. Emergence of EVE genes～
02:13 4. Genome structure of retroviruses～
03:18 5. Syncytins are also involved in muscle repair and development～
04:00 6. EVE-derived genes has dynamically changed during mammalian evolution～
05:11 7. Even though some EVE-derived genes have similar functions, their origins are different among lineages～
05:52 8. Problems on the current prediction programs for EVEs～
06:15 9. RepeatMasker is not applicable to identification of functional EVE genes～
07:19 10. 20 genomes of 19 mammalian species～
07:29 11. Identification methods for EVE ORFs in genomes～
08:35 12. EVE ORF sequences in the gEVE Database
09:21 13. syncytin-1 linke sequences in mammalian genomes～
10:17 14. Publicly available NGS data～
10:42 15. RNA-seq analysis of human placenta～
12:20 16. Recombinant MyoERV-EGFP expression in C2C12～
13:08 17. GenomeSync and GSTK～
13:52 18. Comprehensive search for Non-retroviral EVE in 3641 eukaryotic genomes～
14:28 19. Filoviruses including Ebola viruses found in several species’ genomes belonging to rodents and marsupials～
15:17 20. Flu virus in salmon genomes?～
16:19 21. Summary and future study～

170712_NIGsympo_208_nakagawa.mov