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English

  • 2007-12-19#p01 togoTV -JSBi2007-
  • 2008-12-19#p01 Functional profiling of OMIM data using MeSH vocabulary -JSBi2008-
  • 2009-03-04#p01 How to make probeID list for microarray using Biomart
  • 2009-03-12#p01 How to list the intersection of specific TFBS and upstream region of genes using Galaxy
  • 2010-01-07#p01 How to use database catalog in LSDB
  • 2010-01-14#p01 How to use OReFiL
  • 2010-01-20#p01 How to use TogoWS REST service
  • 2010-01-21#p01 How to use Taxonomy icon in LSDB
  • 2010-01-30#p01 How to use DNA database overview and search
  • 2010-02-17#p01 How to use inMeXes
  • 2010-05-12#p01 Copyright in the Digital Age and Its Impact on Scientific Data Sharing (日本語字幕付き)
  • 2010-08-16#p01 How to use Gene Expression Omnibus (GEO) Overview 2010
  • 2010-09-01#p01 How to use Allie abbreviations search with corresponding long forms 2010
  • 2010-11-17#p01 How to use BodyParts3D/Anatomography 2010
  • 2011-03-04#p01 Managing Very Large Genome Databases
  • 2011-03-05#p01 BioMart: data federation framework for large collaborative projects
  • 2011-03-06#p01 How to make a monkey: functional adaptation in the primate genome
  • 2011-03-07#p01 Large-scale Text Mining for Biological Data
  • 2011-03-08#p01 GXP and GMount: Two small building blocks for large-scale parallel data
  • 2011-08-06#p01 Introduction to the NBDC/DBCLS BioHackathon 2011
  • 2011-08-07#p01 The Program Concerning Technology Development for Database Integration
  • 2011-08-08#p01 SPARQLing UniProt RDF: Using RDF based technologies to aid biological curation efforts
  • 2011-08-09#p01 BioMart introduces semantic-web querying to federated biomedical-scale databases
  • 2011-08-11#p01 Biomedical semantics in the Semantic Web
  • 2011-08-12#p01 From Triples to Axioms: On the Path to Formalizing Scientific Knowledge
  • 2011-08-13#p01 The EDAM ontology of data and methods, and BioXSD
  • 2011-08-14#p01 NCBO Web services and the Development of Semantic Applications
  • 2011-08-16#p01 RDF Foundry - a call for a community effort to harmonize triple store practices
  • 2011-08-17#p01 BioSharing: data sharing standards, resources and cooperating procedures
  • 2011-08-18#p01 ISA infrastructure: collecting and managing multi-omics datasets with rich semantics
  • 2011-08-19#p01 MIRIAM Registry: annotations and cross referencing framework
  • 2011-08-20#p01 Semantic Systems Biology: enabling integrative biology via Semantic Web technologies
  • 2011-08-21#p01 Ontology-based integration and analysis of phenotypes
  • 2011-08-22#p01 PSICQUIC - Standard access to molecular interaction databases
  • 2011-08-23#p01 Modeling and Populating a Large Biomedical Knowledge Base for Genome-Scale Analysis
  • 2011-08-24#p01 The Tree of Life as central unifying concept for the integration of phylogenetic knowledge
  • 2011-08-25#p01 Connecting TOPSAN to Computational Analysis via Semantic Web Technology
  • 2011-08-26#p01 Large-scale information extraction through text mining
  • 2011-08-27#p01 URI Resolution and Management Service with LOD
  • 2011-09-05#p01 EBI Roadshow at DBCLS - Access to Genes and Genomes with Ensembl
  • 2011-09-06#p01 EBI Roadshow at DBCLS - Transcriptomics and Pathways
  • 2011-12-13#p01 ゲノムメチル化とエピジェネティクスI:Genome Methylation and Epigenetics I: Unity in Diversity - A Curious Case of DNA Methyltransferases
  • 2011-12-14#p01 ゲノムメチル化とエピジェネティクスII:Genome Methylation and Epigenetics II: Helicobacter pylori
  • 2011-12-15#p01 ゲノムメチル化とエピジェネティクスIII:Genome Methylation and Epigenetics III: DNA Communications by Type III Restriction Enzymes: 1D looping or 3D looping or Both?
  • 2012-02-15#p01 GGRNA: search engine for genes and transcripts
  • 2013-06-23#p01 Biohackathon 2013 Welcome address
  • 2013-06-24#p01 Introduction to the NBDC/DBCLS BioHackathon 2013
  • 2013-06-25#p01 Integration of Microbial Data Resources with Semantic Web Technologies
  • 2013-06-26#p01 Tripling Bioinformatics Productivity
  • 2013-06-27#p01 Semantic Web Technologies in Proteomics. An EBI overview
  • 2013-06-29#p01 Linking Text Mining Efforts to Semantic Web
  • 2013-06-30#p01 Towards Standardization of Annotation Representation for Text and Other Web Resources
  • 2013-07-01#p01 The FANTOM5 project: Identifying the complete set of promoters used to define cellularity
  • 2013-07-02#p01 Opportunities and Challenges in Nanopublishing
  • 2013-07-03#p01 Identifiers.org: Practical Integration Tool for Heterogeneous Datasets
  • 2013-07-04#p01 BioDBCore: Current Status and Next Developments
  • 2013-09-03#p01 Technology development of database integration to make sense of big data in lifescience
  • 2014-03-05#p01 Collecting amino acid sequences and building a phylogenetic tree on the aLeaves and MAFFT servers.
  • 2014-04-13#p01 CRISPRdirect: designing CRISPR/Cas guide RNA sequnece
  • 2014-11-09#p01 Introduction to the NBDC/DBCLS BioHackathon 2014
  • 2014-11-10#p01 Introduction to the Tohoku Medical Megabank Organization and What is Happening in the Human Reference Genome?
  • 2014-11-11#p01 Integrated database and knowledge database in prospective cohort study at the Tohoku Medical Megabank Project
  • 2014-11-12#p01 Embracing Semantic Web at EMBL-EBI
  • 2014-11-13#p01 Identifiers.org: new services to support the Semantic Web community
  • 2014-11-14#p01 Introduction to BioJS
  • 2014-11-15#p01 Construction of ortholog database using the Semantic Web technology
  • 2014-11-16#p01 Semantic integration of orthology resources: beyond the OGO experience
  • 2014-11-17#p01 Text mining for ontology learning and matching
  • 2014-11-18#p01 Rhea: a reactions database linking biology and chemistry
  • 2014-11-19#p01 PRIDE and ProteomeXchange – Making proteomics data accessible and reusable
  • 2014-11-20#p01 PubChemRDF: Towards a semantic (web) description of PubChem
  • 2015-02-06#p01 Tutorial movies for TargetMine ~keyword, Template Search~
  • 2015-03-13#p01 Tutorial movies for TargetMine ~ List Search, QueryBuilder ~
  • 2015-03-17#p01 Introduction of BLAH2015
  • 2015-03-18#p01 Principles for representing knowledge in and about texts
  • 2015-03-19#p01 Aligning bio-events in NLP tasks with biological standards and ontologies
  • 2015-03-20#p01 The linked open bibliome as a Popperian World 3: implications on co-reference and criticism
  • 2015-03-21#p01 Interoperability of Text Corpus Annotations with the Semantic Web
  • 2015-03-22#p01 PubAnnotation-query: a search tool for multi-layer RDF-annotated corpora
  • 2015-03-23#p01 Could anyone actually use PubAnnotation?
  • 2015-03-24#p01 Crowdsourcing and human annotation: going beyond the legends to create quality data
  • 2015-03-25#p01 Bio-medical entity prioritisation based on literature with Semantic Web annotations
  • 2015-03-26#p01 Linked annotations: a middle ground for manual curation of biomedical databases and text corpora
  • 2015-05-14#p01 GGGenome: a fast and simple DNA sequence search engine
  • 2015-05-21#p01 The Galaxy Ecosystem
  • 2015-05-30#p01 The Australian Genomic Virtual Lab
  • 2015-06-02#p01 Garuda - The way biology connects
  • 2015-11-28#p01 Research at the Atomic Bomb Disease Institute, Nagasaki University
  • 2015-11-29#p01 UniProt SPARQL in production
  • 2015-11-30#p01 PubChemRDF examples, potential applications, and future directions
  • 2015-12-01#p01 Efforts in the semantic standardization of orthology content
  • 2015-12-02#p01 Applying RDF/SPARQL to ortholog databases
  • 2015-12-03#p01 GlycoRDF ontology
  • 2015-12-04#p01 MeSH RDF 2015
  • 2015-12-05#p01 Phenotype Ontologies and their role in understanding rare disorders
  • 2015-12-06#p01 Introduction of DisGeNET, a discovery platform for the dynamical exploration of human diseases and their genes
  • 2015-12-07#p01 Network Analysis and Linking for Bio2RDF
  • 2015-12-08#p01 Identifiers.org updates
  • 2015-12-09#p01 YacMa: a semantic web platform for biological knowledge integration
  • 2015-12-10#p01 The Human Genome Variation Map Pilot Project
  • 2015-12-11#p01 Bionode - Modular and universal bioinformatics
  • 2015-12-12#p01 Writing FOSS software for big biology
  • 2015-12-13#p01 BioInformatics and Semantic Web, what do they need a bioinformatician and a biomedical researcher?
  • 2015-12-14#p01 Semantics for experimental protocols
  • 2015-12-15#p01 Text Mining Tools for Assisting Literature Curation
  • 2015-12-16#p01 Europe PubMed Central and Linked Data
  • 2015-12-17#p01 LODQA: natural language interface to SPARQL endpoints
  • 2015-12-18#p01 Lightning talks (5min each) @Biohackathon2015
  • 2016-01-20#p01 Biomedical semantic technologies: from the bench to the bedside
  • 2016-01-21#p01 Deriving Linked Annotations from Corpora
  • 2016-01-22#p01 Natural Language Processing and Semantic Annotation of Biomedical Scientific Literature for Knowledge Network Discovery
  • 2016-01-23#p01 The SPECIES-800 corpus
  • 2016-01-24#p01 From Text to Knowledge Base and back: issues and challenges in Life Sciences
  • 2016-01-25#p01 Lannbridge: transparent interoperability for Linked Annotations
  • 2016-01-26#p01 Real-time tagging of biomedical entities
  • 2016-01-27#p01 Making tagtog interoperate with PubAnnotation
  • 2016-01-28#p01 BioTate, an annotation framework for biomedical information
  • 2016-01-29#p01 Validating the wisdom of the crowd for pharmacovigilance: linking adverse reactions reported in Social Media to literature
  • 2016-01-30#p01 Unifying knowledge resources for named entity recognition and normalization
  • 2016-01-31#p01 relna: corpus of Relations of Transcription Factors to Genes or Proteins
  • 2016-02-01#p01 A corpus of psychological diseases and their potential causes
  • 2016-02-04#p01 Functional Annotation of Sequences using Blast2GO
  • 2016-02-17#p01 Creating a pedigree chart using f-tree
  • 2016-04-08#p01 Introduction to the 2nd DBCLS RDF summit
  • 2016-04-09#p01 The Human Genome Variation Map Graph Bake-Off
  • 2016-04-10#p01 A toolkit for working with genome variation graphs
  • 2016-04-11#p01 Indexing Graphs for Path Queries
  • 2016-04-12#p01 Exchanging case summaries to discover rare disease cohorts across organizations
  • 2016-04-13#p01 RDF/SPARQL a Swiss-Prot practical perspective
  • 2016-04-14#p01 Annotation —???—> variant graph
  • 2016-04-15#p01 Big vs enormous data in genomics
  • 2016-04-16#p01 Fast dynamic programming algorithm for nucleotide sequences, and long read alignment on string graphs
  • 2016-04-17#p01 SlideSort for comparative NGS data and privacy preserving search for sensitive data
  • 2016-04-25#p01 How to use RefEx: Reference Expression Dataset
  • 2016-06-17#p01 Introduction to the BioHackathon 2016
  • 2016-06-18#p01 Welcome address: Institute for Advanced Biosciences
  • 2016-06-19#p01 Hacking user interface designs for the effective exploration of biological data
  • 2016-06-20#p01 Integrated database “dbTMM”: integration of large-scale data of genomic prospective cohort study in Tohoku Medical Megabank project toward personalized healthcare
  • 2016-06-21#p01 MetaExplorer: how to mine data from metagenomics experiments
  • 2016-06-22#p01 A Wikidata Powered Model Organism Database of Microbes
  • 2016-06-23#p01 Drug Safety portal
  • 2016-06-24#p01 Facilitating semantic alignment of EBI services
  • 2016-06-25#p01 Progress towards a semantic representation of PubChem
  • 2016-06-26#p01 Impact of schema.org in the semantic web and interoperability of life sciences data
  • 2016-06-27#p01 Providing Model Organism Linked Data From InterMine
  • 2016-06-28#p01 disgenet2r: the DisGeNET R package
  • 2016-06-29#p01 Public Data Repositories and Standards in Proteomics
  • 2016-06-30#p01 Dogma conscious and agnostic sharing of high-throughput data
  • 2016-07-01#p01 Resequencing against a pan-genome
  • 2016-07-02#p01 The Graph Positional Burrows-Wheeler Transform
  • 2016-07-03#p01 Lightning talks (5min each) @BioHackathon2016